Abstract
Following transplantation, human CD4+T cells can respond to alloantigen using three distinct pathways. Direct and semi-direct responses are considered potent, but brief, so contribute mostly to acute rejection. Indirect responses are persistent and prolonged, involve B cells as critical antigen presenting cells, and are an absolute requirement for development of donor specific antibody, so more often mediate chronic rejection. Novel in vitro techniques have furthered our understanding by mimicking in vivo germinal centre processes, including B cell antigen presentation to CD4+ T cells and effector cytokine responses following challenge with donor specific peptides. In this review we outline recent data detailing the contribution of CD4+ T follicular helper cells and antigen presenting B cells to donor specific antibody formation and antibody mediated rejection. Furthermore, multi-parametric flow cytometry analyses have revealed specific endogenous regulatory T and B subsets each capable of suppressing distinct aspects of the indirect response, including CD4+ T cell cytokine production, B cell maturation into plasmablasts and antibody production, and germinal centre maturation. These data underpin novel opportunities to control these aberrant processes either by targeting molecules critical to indirect alloresponses or potentiating suppression via exogenous regulatory cell therapy.
Introduction
There are three pathways by which transplantation antigens are recognized by CD4+ T cells [–]. In the “direct” and “semi-direct” pathways, intact donor major histocompatibility complex (MHC) proteins are recognized on the surface of either donor antigen presenting cells (APC) or, in the semi-direct pathway, recipient APC, after MHC transference from donor cells via various routes, including exosome transfer []. For detailed description of these pathways, their role and importance in rejection, the reader is referred to several recent reviews [, ].
Evidence that a third pathway, called indirect could initiate graft rejection originally came from congenic animal models in which donor and recipient differed only at minor antigenic loci [–], and after transplantation of grafts from MHC-deficient rodents [, ]. In both, grafts were rejected quickly after activation of self-MHC-restricted CD4+T cells recognising alloantigen presented by recipient APC [, ]. The extensive pre-clinical data relating to the role of indirect alloresponses in animal models of transplantation will be briefly reviewed in this introductory section.
Thus, indirectly alloreactive CD4+ T lymphocytes exist in the normal repertoire [, ], at precursor frequencies lower than T cells activated by direct allorecognition [, ], though these frequencies increase after immunisation with soluble MHC []. After transplantation, indirectly alloreactive CD4+ T cells appear in regional lymph nodes [, ], indicating this pathway is activated physiologically. These cells are important, as pre-transplant immunisation with donor MHC causes accelerated rejection [, ]. Once activated, indirectly alloreactive CD4+ T cells can promote the generation of CD8+ cytotoxic T lymphocytes [], delayed type-hypersensitivity (DTH) responses within the graft [], and the generation of donor specific antibody (DSA) []. DSA are only generated after indirectly alloreactive CD4+ T cells cognately interact with donor-specific B lymphocytes [–]. This involves specific differentiation of T follicular helper (TFH) lymphocytes [] in germinal centres (GC) of secondary lymphoid organs [, ] (Figure 1).
FIGURE 1
Consistent with the crucial role B cells play in the T cell responses to infection [28], there is substantial evidence from animal models that B cells play a central role in indirect alloresponses, especially for the development of chronic rejection (CR). This is likely due to the fact they can undergo clonal expansion through proliferation, and possess specific antigen receptors capable of increasing affinity during an ongoing immune response. For example, when indirect pathway CD4+ T cells can only be stimulated by non-B cell APC (such as dendritic or myeloid cells), after mature B cells are prevented from developing [
For the remainder of this review, we will explore clinical data to assess the importance of the indirect pathway for human allograft rejection, particularly CR, review the evidence that this pathway can be suppressed by endogenous regulatory cell populations, and discuss whether this has any potential translational relevance.
Sensitisation of the Indirect Pathway in Humans Associates With Graft Rejection
Multiple studies have reported an association between pre-transplant donor-specific IFNγ production in enzyme-linked immunosorbent spot assay (ELISPOT) and risk of post-transplant rejection, as analysed in a recent meta-analysis [
However, most of the studies assessing pre-transplant status have used irradiated whole donor peripheral blood mononuclear cells (PBMC) or splenocytes as the source of donor material, meaning they are likely detecting cytokine production by directly alloreactive lymphocytes as well as CD4+T cells activated by the indirect pathway.
Assays that assess only indirect pathway sensitisation (see Table 1) use donor antigen prepared in ways unable to stimulate direct responses. Saleem et al [
TABLE 1
| Publication | Study Group | Stimulus | Assay used | Response | Responses after B Cell Depletion | Responses after depletion of CD25hi cells |
|---|---|---|---|---|---|---|
| Saleem et al [ | 12 kidney transplant and 3 paediatric heart lung recipients with history of rejection | Synthesised class I peptides matching donor HLA | Recipient PBMC in 4-day MLR | No responses | N/A | N/A |
| Iniotaki-Theodoraki et al. [ | 14 kidney transplant recipients | APC-depleted donor PBMC | Recipient PBMC in 5-day MLR | Proliferationa in 6/14 at baseline. Proliferation in 12/14 on serial testing, but not associated with future graft dysfunction | N/A | N/A |
| Coelho et al [ | 14 kidney transplant recipients | APC-depleted donor PBMC | Recipient PBMC in 9-day MLR | Proliferationa in 8/14. No association with future graft dysfunction | N/A | N/A |
| Liu et al [ | 32 heart transplant recipients | Synthesised class II peptides matching donor HLA | Serial limiting dilution analyses (detecting proliferating cells) using recipient PBMC AND T cells isolated from donor heart | Proliferationa in 18/28 who went onto have episode of rejection within 4 weeks. Correlation between responses from cells in circulation and graft. Association with DSA in patients with CR | NA | NA |
| Crespo et al [ | 101 kidney transplant recipients | CD2 or CD3-depleted donor PBMC | Recipient PBMC in IFNγ ELISPOT at 3 and 6/12 post-Tx | 3-month ELISPOT responsea correlated with protocol biopsy-proven rejection at 6 months, and with 24-month DSA development | N/A | N/A |
| Najafian et al [ | Recipients of a) HLA-DR-matched kidney transplants (n = 9), HLA-DR mismatched transplants with b) no rejection (n = 11), or c) history of rejection (n = 15) | Synthesised peptides representing hypervariable regions of 5 commonest HLA-DR | Recipient PBMC in IFNγ ELISPOT | Frequency of respondinga T cells increased with HLA-DR mismatches and history of rejection | N/A | N/A |
| Besterd et al [ | 33 kidney transplant recipients | Donor cell membrane preparations | Recipient PBMC in IFNγ ELISPOT | Detectable responsesa in 20/33 (60%) – strong correlation with time since Tx and presence of proteinuria | N/A | N/A |
| Hornick et al [ | 10 heart transplant recipients, 6 with CR. 1 kidney transplant recipient with CR | Donor cell membrane preparations or synthesised donor class I peptides | Limiting dilution analyses (detecting IL-2-producing cells) using recipient PBMC | Detectable responsesa in 5/7 with CR but 0/4 without CR | N/A | N/A |
| Haynes et al [ | 5 cohorts of kidney transplant recipients; a) identical twin donor organ (n = 2), b) clinically tolerant (n = 11), c) stable monotherapy (n = 7), d) standard therapy (n = 18), e) CR (n = 7) | Donor cell membrane preparations, or HLA coated beads | PBMC in trans-vivo assay | Increasing responsivenessa from groups a) – e). Responses reduced in e) with antibodies against IFNγ or IL-17. Responses revealed in a) with antibodies against TGFβ. Responses to HLA coated beads associated with DSA | No impact on responses of two patients | N/A |
| Vella et al [ | 4 cohorts of kidney transplant recipients; a) HLA-DR MM with CAD (n = 11), b) HLA-DR MM without CAD (n = 10), c) No HLA-DR MM with CAD (n = 5), d) no HLA-DR MM, no CAD (n = 18) | Synthesised peptides representing hypervariable regions of 3 common HLA-DR | Recipient PBMC in 7-day MLR, plus limiting dilution analyses (detecting proliferating cells) | Responsesa in 9/11 group a), but 0/10 group b) and 2/23 groups c) and d). Highest frequency of responding cells in group a) | N/A | N/A |
| Baker et al [ | 22 renal transplant recipients, 9 with CAD | Donor cell membrane preparations | Limiting dilution analyses (detecting IL-2-producing cells) using recipient PBMC | Significantly higher frequencies of respondinga cells in the 9 patients with CAD | N/A | N/A |
| Shiu et al [ | 65 kidney transplant recipients with ‘for cause’ or protocol biopsies 52/65 with AMR | Donor cell membrane preparations | CD8 depleted recipient PBMC in IFNγ ELISPOT | Donor specific IFNy productiona in 45/119 (38%). samples. This correlated with reduction in eGFR over time | 29/37 (78%) responsive AMR samples had significant reduction in IFNy production compared to 4/8 (50%) in samples from no AMR. In contrast, 17/69 (25%) samples had significant increase in IFNy production | 21/66 (32%) samples had significant increase in IFNy production |
| Shiu et al [ | 51 kidney transplant patients with cAMR. | Donor cell membrane preparations | CD8 depleted recipient PBMC in IFNγ ELISPOT | Donor specific IFNy productiona in 58/203 (29%) samples | 30/58 (52%) responsive samples had significant reduction in IFNy production | 14/30 (46%) samples had significant increase in IFNy production |
| Burton et al [ | 43 HLA sensitised kidney transplant recipients | PURE HLA proteins matching DSA | CD8 depleted recipient PBMC in IFNγ ELISPOT | Donor specific IFNy productiona in 19/98 (19%) samples | 13/19 (69%) responsive samples had significant reduction in IFNy production, associated with HLA binding by CD27+ B cells. In contrast, 11/98 (11%) samples had significant increase in IFNy production, associated with high proportion of transitional B cells | 5/50 (10%) samples had significant increase in IFNy production |
| Salama et al [ | 23 kidney transplant patients, 8 with previous rejection and CAD. | Donor specific HLA-DR allopeptides | Recipient PBMC in IFNγ ELISPOT | Not reported | N/A | Increased IFNy production in 6/15 (40%) stable patients but only 1/8 (12.5%) with history of rejection. Responses increased in 8/17 (47%) of all non-responsive samples |
| Tanaka et al [71] | 62 kidney or liver transplant recipients. 17 pre sensitised with DSA | Donor Cells | Recipient PBMC in 5-day MLR | N/A | Significant post-rituximab increase in proliferation by CD4+ T cells ONLY in DSA + group | N/A |
| Schachtner et al [72] | 150 blood group compatible (n = 98) or incompatible (n = 52) living donor kidney transplants treated with rituximab induction | Irradiated donor PBMC | Recipient PBMC in IFNγ ELISPOT | Pre-treatment responsesa seen in 20/98 (20%) ABO compatible and 12/52 (23%) ABO incompatible patients | Rates of 12-month TCMR were 8/20 (40%) in ABO compatible and 7/12 (57%) in ABO incompatible | N/A |
Summary of functional assays evaluating indirect alloreactive donor specific responses in transplant recipients.
Detectable responses in all these different assays imply the presence of CD4+ T cells that are sensitised to donor antigens.
Abbreviations: AMR, antibody-mediated rejection; APC, antigen presenting cell. CAD, chronic allograft dysfunction; cAMR, chronic AMR; CD8,25,27, cluster of differentiation 8,25,27 +cells; CR, chronic rejection; DSA, donor specific antibody; ELISPOT, enzyme-linked immunosorbent spot assay; HLA- human leukocyte antigen; IFNγ -interferon gamma; IL-2, 17, interleukin-2, 17; MM, mismatch; MLR, mixed lymphocyte reaction; N/A, not applicable; PBMC, peripheral blood mononuclear cells; TCMR–T, cell-mediated rejection; TGFβ, transforming growth factor-beta; Tx–transplant.
In contrast, in 32 heart transplant patients studied within 10 weeks of transplantation, all of whom underwent protocol biopsies, Liu et al [
Along similar lines, Najafian et al studied indirect alloresponses in several cohorts of renal transplant recipients using recipient PBMC stimulated with synthesised peptides, chosen to represent sequences from the five most frequent donor HLA DR types [
Hornick et al [
Vella et al [
Finally, there are numerous studies linking “predicted indirectly recognizable HLA epitopes” (PIRCHE) scores with development of subsequent DSA [
In combination, all these pieces of evidence link sensitisation of CD4+ T cells recognising donor antigens via the indirect pathway with previous rejection, and strongly associate the indirect pathway with the development of DSA and subsequent graft dysfunction manifesting as CAD/CR.
CD4+ T Cells With a T Follicular Helper Phenotype Are Involved in Indirect Alloreactivity
Louis et al [54] studied 105 patients, including 20 with DSA and a history of AMR and 31 with DSA but without AMR. In patients with DSA & AMR, there was an over-representation of a CD4 + CXCR5+ TFH subset compared to patients with DSA but no AMR. These cells expressed activation and memory markers and responded to donor cell lysates by expressing IL-21. They could promote DSA appearance when incubated with autologous B cells and their transcriptional profile suggested they were involved in GC responses, providing help to B cells. The DSA in these patients were skewed towards IgG1, IgG3 and C1q binding and the majority of these TFH were Th-1 and Th-17, consistent with a role in isotype switching.
Kenta et al [
Both these studies indicate that the CD4+ T cells involved in indirect alloresponses adopt a TFH phenotype, capable of secreting IFNγ, IL-17 or IL-21.
Role and Phenotype of B Cells in Indirect Pathway
Shiu et al [
All these data indicate that antigen-experienced, donor antigen specific B cells are present in the circulation of patients with DSA and cAMR and are capable of presenting donor HLA peptides to Th-1, IFNγ secreting CD4+ T cells.
Consistent with these data, Louis et al [
Indirect Alloreactivity is Inherently Involved in the GC Reaction
GC formation within secondary lymphoid organs during an immune response has been studied extensively within mouse models (Figure 1). Antigen-specific B cells initially undergo clonal expansion within the dark zone of the GC, before moving to the light zone, where continued interaction with TFH recognising the same antigen via the indirect pathway is critical for the GC processes of affinity maturation, driven by somatic hypermutation of immunoglobulin genes, class switching, memory B cell formation and plasma cell differentiation. In humans, it is known that GC TFH cells can be found circulating in the blood [
FIGURE 2

Regulation of Indirect alloreactivity and GC reaction. Aspects of the interaction between CD4+ TFH and GC B cells are regulated by specialised regulatory populations of both B cells, expressing high levels of CD24 and CD38 (TrB) and T cells, expressing high levels of CD25, FoxP3 and IL-10. There is evidence that separate and distinct subpopulations of these regulatory cell populations are responsible for regulating different aspects of the GC reaction, including DSA production and GC maturation [
Physiological Suppression of the Indirect Pathway and Relevance In Vivo
By Tregs
Salama et al [
However, Shiu and Burton [
Shiu [
By Bregs
With regard to regulation by B cells, it was also clear from some of the studies above that in some samples, initial depletion of B cells was associated with increases in the frequency of IFNγ producing CD4+ cells. This pattern was found in up to 25% of samples [
All these data are also consistent with that generated by other groups. Tanaka et al [71] compared pre- and post- rituximab 5-day donor MLRs in 62 kidney or liver transplant recipients, 17 of whom were sensitised with DSA. Pre-rituximab CD4+ T cell proliferation, measured using CFSE dilution was equivalent in sensitised and non-sensitised recipients, but in post-rituximab MLRs, there was significantly increased proliferation of the CD4+ T cells from the DSA+ group. The authors speculated that B cells were suppressing donor specific CD4+ T cells in sensitised recipients.
Consistent with this, Schachtner et al measured IFNγ ELISPOT reactivity in patients receiving either blood group compatible or incompatible kidney transplants [72]. 20% of those receiving ABO compatible kidneys demonstrated pre-transplant anti-donor reactivity, implying prior sensitisation and 40% of these patients had an episode of T cell-mediated rejection in the first year. 23% of those receiving ABO incompatible (ABOi) kidneys had a positive ELISPOT, but the rejection rate in these patients was 57%. Of the various differences between these two populations, one explanation is that rituximab, used exclusively in the ABOi patients, depleted regulatory B cells that spontaneously regulate the indirect alloresponse in some sensitised patients [73], an interpretation consistent with the data generated by Shiu et al [
Mechanistic Insights
Regarding how these different regulatory populations function, Spadafora-Ferreira et al [74, 75] showed that at least some indirectly alloreactive T cells were FoxP3+ Tregs secreting IL-10. Shiu et al [
Finally, Louis et al, in a second report [
All these lines of evidence indicate the existence, in patients, of different regulatory populations of T and B cells capable of suppressing mechanisms involved in different aspects of the indirect alloresponse and GC reaction, including donor antigen-specific T cell cytokine production, DSA development and GC differentiation (Figure 2). Importantly, the presence/absence and activity of these populations correlates with graft outcomes. As each layer of regulation may act separately from others, this is one potential reason why the tight links between indirect alloreactivity, DSA formation and clinical phenotype have not always been obvious from the published literature until recently.
Therapeutic Manipulation of Indirect Alloreactivity
Potential molecular targets to disrupt interactions between TFH and B cells involved in indirect alloimmunity, GC formation and DSA generation have been recently reviewed by Louis et al [
On the back of the evidence presented above, Dudreuilh et al have initiated a phase 2 clinical trial in sensitised dialysis patients awaiting a transplant, to investigate primarily whether adoptive transfer of ex-vivo expanded Tregs can suppress the CD4+ T cell responses to HLA proteins in indirect IFNγ/IL-17 fluorospot assay [86]. Secondary objectives are to determine the proportion of sensitised dialysis patients who may be eligible for a future trial ased on patterns of IFNγ/IL-17A responses to HLA, how long HLA-specific responses remain suppressed, what adverse events associate with Treg therapy, how adoptive Treg therapy changes the number and phenotype of circulating Tregs comparing baseline to post-Treg treatment and finally to determine how adoptive Treg therapy changes HLA Ab profiles. The HLA proteins used are based on the DSA that patients have. The trial is actively recruiting and at the point of writing, has entered the treatment phase, expecting to complete in late 2025. The ambition beyond this is to perform a second trial with clinical endpoints to assess the feasibility of treating highly sensitised patients with Tregs prior to any future transplant. If feasible, this strategy has the potential to improve clinical outcomes in these patients without using significantly enhanced immunotherapy.
Summary
The indirect alloresponse describes a pathway of antigen recognition involving uptake of donor antigens by APC that are processed into peptides then presented in the antigen-binding grooves of recipient HLA class II to CD4+ T cells, following which all immune effector pathways capable of injuring the transplant can be activated. B cells have been shown to be extremely important APC and are necessarily involved in the development of DSA, via a GC reaction and AMR. These B cells have a specific phenotype associated with a GC reaction and can be found in the circulation, particularly in patients with AMR. The indirect pathway also favours the development of CD4+ T cells with a TFH phenotype: these can also be found in the circulation, particularly in patients with a history of AMR.
Although initial evidence supported the idea that rejection mediated via the indirect pathway was associated with a loss of immune regulation, newer data support the idea that different aspects of the indirect alloresponse, including CD4+ T cell cytokine production, B cell differentiation into antibody secreting plasmablasts, and processes involved in GC maturation, can each be regulated separately by different populations of regulatory T and B cells, including in patients with CR. Importantly the proportion and activity of these populations associates with clinical outcomes. This opens the possibility that CR might be managed by targeting specific molecules involved in the indirect alloresponse, but also the possibility that autologous ex-vivo expanded regulatory populations might be used to treat patients to improve outcomes associated with DSA/AMR without the side effects associated with excessive immunosuppression.
Statements
Author contributions
All authors contributed to writing and review of the manuscript. AD conceived and planned the article. All authors contributed to the article and approved the submitted version.
Funding
The author(s) declare that financial support was received for the research, authorship, and/or publication of this article. Primary funding to these authors is from Medical Research Council UK grant MR/T025573/1.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Footnotes
1.^In 17 of the 20, the rejection was classified as mixed AMR/TCMR.
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Summary
Keywords
indirect alloresponse, chronic rejection, immune regulation, donor specific antibody (DSA), T follicular helper cells, B lymphocytes
Citation
Basu S, Dudreuilh C, Shah S, Sanchez-Fueyo A, Lombardi G and Dorling A (2024) Activation and Regulation of Indirect Alloresponses in Transplanted Patients With Donor Specific Antibodies and Chronic Rejection. Transpl Int 37:13196. doi: 10.3389/ti.2024.13196
Received
27 April 2024
Accepted
06 August 2024
Published
20 August 2024
Volume
37 - 2024
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© 2024 Basu, Dudreuilh, Shah, Sanchez-Fueyo, Lombardi and Dorling.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Anthony Dorling, anthony.dorling@kcl.ac.uk
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