European Society for Organ Transplantation (ESOT) Consensus Statement on the Use of Non-invasive Biomarkers for Cardiothoracic Transplant Rejection Surveillance

Abstract

While allograft rejection (AR) continues to threaten the success of cardiothoracic transplantation, lack of accurate and repeatable surveillance tools to diagnose AR is a major unmet need in the clinical management of cardiothoracic transplant recipients. Endomyocardial biopsy (EMB) and transbronchial biopsy (TBBx) have been the cornerstone of rejection monitoring since the field’s incipience, but both suffer from significant limitations, including poor concordance of biopsy interpretation among pathologists. In recent years, novel molecular tools for AR monitoring have emerged and their performance characteristics have been evaluated in multiple studies. An international working group convened by ESOT has reviewed the existing literature and provides a series of recommendations to guide the use of these biomarkers in clinical practice. While acknowledging some caveats, the group recognized that Gene-expression profiling and donor-derived cell-free DNA (dd-cfDNA) may be used to rule out rejection in heart transplant recipients, but they are not recommended for cardiac allograft vasculopathy screening. Other traditional biomarkers (NT-proBNP, BNP or troponin) do not have sufficient evidence to support their use to diagnose AR. Regarding lung transplant, dd-cfDNA could be used to rule out clinical rejection and infection, but its use to monitor treatment response is not recommended.

Introduction

Despite major advances in the management of immunosuppression, allograft rejection (AR) continues to threaten the success of cardiothoracic transplantation. AR can lead to acute immune-mediated graft dysfunction, as well as chronic multifactorial graft-specific diseases, such as cardiac allograft vasculopathy (CAV) and chronic lung allograft dysfunction (CLAD), both ultimately leading to graft failure and death.

Lack of accurate and repeatable surveillance tools to diagnose AR is a major unmet need in the clinical management of cardiothoracic transplant recipients. Endomyocardial biopsy (EMB) and transbronchial biopsy (TBBx) have been the cornerstone of rejection monitoring since the field’s incipience. Long considered the “gold standard,” both suffer from significant limitations, including sampling error, high cost, potential complications, and patient discomfort. Moreover, prior studies have shown poor overall concordance of biopsy interpretation among pathologists [1].

The vast majority of TBBx and EMB performed during surveillance do not show signs of clinically meaningful AR, hence highlighting the need for reliable non-invasive biomarkers to screen for AR and to reduce the frequency of invasive procedures [2, 3].

A multitude of biomarkers for rejection diagnosis have been developed over the past few decades and are at different stages of commercial development and clinical validation. Given these advances in the field, a working group was convened by the European Society of Organ Transplantation (ESOT) that included healthcare professionals from across Europe and North America with expertise in the field. The panel has reviewed the existing literature for the degree of evidence supporting the use of these assays in clinical practice in order to provide clinical practice recommendations for the clinical use of biomarkers in cardiothoracic transplant rejection surveillance, and to highlight knowledge gaps that need to be fulfilled by future research.

In this context, the working group has chosen to focus the discussion and recommendations mainly on emerging biomarkers assayed by molecular biology techniques (i.e., the gene expression profiling (GEP) test AlloMap and donor-derived cell-free DNA [dd-cfDNA] assays), given their commercial availability as diagnostic tests and the initial use in clinical practice (Table1). In addition, two cardiac biomarkers [troponin and B-type natriuretic peptides (BNP)] which have been re-examined in recent studies as to their utility for rejection surveillance in heart transplantation, are discussed.

The hallmark of allograft rejection is immune-mediated cell necrosis. Transplantation introduces genomic admixture with donor and recipient genomes. During allograft rejection, cell-free DNA fragments are released into the recipient’s bloodstream from the donor allograft. Leveraging transplant genomic admixture, the dd-cfDNA fraction can be identified with modern genomic techniques, which may serve as a biomarker of allograft injury and rejection. Similarly, in heart transplantation, troponin as marker of injury, and BNP as marker of graft dysfunction, may be detected in the recipient’s circulation.

On the other hand, the GEP of circulating peripheral blood mononuclear cells (PBMCs) is thought to reflect host immune responses towards the allograft, which could thus also serve as a biomarker for rejection surveillance.

In order to be useful for accurate rejection surveillance in clinical practice, a biomarker should ideally have the following characteristics: minimally invasive (blood based), quick turn-around time, good inter-sample and inter-laboratory reproducibility, affordable, accessible (in terms of technology and staff requirements), high negative predictive value (NPV) for rejection monitoring, able to categorize common transplant complications, such as acute cellular rejection (ACR), antibody-mediated rejection (AMR) and infection, and not influenced by patient or treatment factors.

In the consensus statements, available evidence on these potential biomarkers is summarized and recommendations are made on the use of non-invasive biomarkers for cardiothoracic transplant rejection surveillance.

Methods

This consensus document follows a process that has been organized and supervised by a dedicated ESOT guidelines taskforce as outlined in a dedicated guideline [4].

Using the PICO (Population, Intervention, Comparison, Outcome) model, clinical questions were formulated, around which the expert panel’s recommendations are focused (Table 2). The rationale for the PICO questions is based on the need to provide guidance on three general domains: 1. Diagnosis/surveillance of acute rejection 2. Diagnosis/surveillance of chronic rejection 3. Prognostic stratification.

For each question, bibliographic searches were developed by experienced staff from the working group. Different members of the group drafted each chapter, which was then reviewed by the whole working group. The panel convened on 13–15th November 2022 (in conjunction with the ESOT TLJ 3.0 meeting in Prague and virtually), when a draft of the final recommendations with supporting evidence was presented and discussed, with further subsequent refinements.

Recommendations were graded according to the strength of the recommendation [strong (1) or weak (2)] and the quality of the evidence [high (A), moderate (B), low (C) or very low (D) (2)].

Other emerging biomarkers are briefly described below as an overview of the scientific landscape and the pipeline of discovery.

PICO Questions and Recommendations

Heart Transplantation

Question 1A. In heart transplant patients with stable graft function, is GEP a reliable surveillance tool for subclinical acute rejection monitoring, compared to endomyocardial biopsy?

Warnings: This test is currently unavailable for clinical use in Europe.

Supporting Evidence

The Allomap® test by CareDx Inc., United States, utilizes GEP of PBMCs to reflect host responses towards the target organ (Table 1).

Randomized studies have shown non-inferiority of Allomap-based surveillance compared to traditional biopsy-based approaches. The IMAGE study defined an abnormal score as ≥34 for adult heart transplant recipients 6 months to 5 years post-transplant, allowing to substantially reduce the number of surveillance EMBs performed, and the eIMAGE study confirmed Allomap non-inferiority in the earlier post-transplant period (55–185 days) [5, 6]. The main limitation of these studies, however, was the very low number of biopsy-proven AR.

Previously, Allomap had been rigorously validated in large observational studies, including Cardiac Allograft Rejection Gene Expression Observational (CARGO II), which included 499 heart transplant recipients from 17 predominantly European centers, and the Outcomes AlloMap Registry (OAR), which included 1,504 subjects from 35 US centers [7, 8]. Both studies showed non-inferiority of Allomap as compared to EMBs for ACR monitoring up to 5 years post-transplant, with respect to the composite outcome of rejection, graft dysfunction, death or re-transplantation, with robust NPV (>98%) and modest PPV (4%–7% among studies) [7, 8]. The OAR study additionally showed no association between higher Allomap scores and CAV, cancer or non-cytomegalovirus infection [8]. Furthermore, GEP scores did not differ between dual organ and heart alone recipients, but there are no randomized trials testing Allomap’s performance in the setting of multi-organ transplantation [8].

Allomap has received endorsement in the 2023 International Society of Heart and Lung Transplantation (ISHLT) guidelines for the care of heart transplant recipients, where it was given a class IIa, level B recommendation for ACR surveillance [9].

Caveats

The Allomap algorithm was developed about 20 years ago, when the diagnosis and surveillance of AMR was not standard clinical practice. Implementation in Europe has been limited by cost considerations and the need to establish laboratory infrastructure for testing; as such, this test is currently unavailable for clinical use. The strength of recommendation is based on the robustness of evidence of consistent high NPV in two randomized clinical trials, in which, however, ACR was detected in less than 4% of all EMBs.

Question 1B. In heart transplant patients with stable graft function, is dd-cfDNA a reliable surveillance tool for subclinical acute rejection monitoring, compared to endomyocardial biopsy in stable recipients?

Warning: Current data are based on centralized laboratory analyses; therefore, caution should be used when using assays performed in local laboratories.

Supporting Evidence

DD-cfDNA assays for rejection surveillance have never been compared head-to-head with EMBs in a randomized clinical trial. The current evidence for their utility in AR monitoring comes primarily from three large cohort studies that were conducted mainly in the United States—the GRAfT study used a research-grade assay, D-OAR used Allosure (CareDx) and the DEDUCE study employed Prospera Heart (Natera). Several dd-cfDNA assays by different vendors have been developed (Table 1).

The GRAfT study used a threshold of ≥0.25% and showed that the test had sensitivity 81%, specificity 85%, PPV 19.6%, NPV 99.2% for rejection detection, defined as ACR≥2R and pAMR ≥1 [3]. The study demonstrated that using a dd-cfDNA-based monitoring strategy could have safely avoided 81% of all routine EMBs [3]. Allosure has been validated in a US-based prospective observational cohort study (D-OAR) of 740 heart transplant recipients in the first 2 years post HT(10). At a 0.2% threshold, the test had sensitivity 44%, specificity 80%, PPV 8.9% and NPV 97.1% to differentiate AR from no rejection [10]. The D-OAR study also included a parallel arm single-center cohort of 33 heart transplant recipients at high risk for AMR and showed that the test had similar performance in this group [10].

The DEDUCE study was an observational 2-center study with retrospective and prospective components testing the performance of the Prospera dd-cfDNA assay for AR surveillance [11]. It included 811 samples from 223 heart transplant recipients [11]. Using a proposed threshold of ≥0.15% for the assay, it had sensitivity 79%, specificity 77%, PPV 25% and NPV 97% for AR. In biopsy-matched non-rejection samples the dd-cfDNA fraction was stable up to 24 months post-transplant, and increased after 24 months [11].

The FreeDNA-CAR was an observational study including 206 patients from 12 Spanish transplant centers. By using the Allonext^® assay (Eurofins Genome) a threshold of ≥0.15% had a 97% NPV for AR. This study was presented at the ESOT 2023 congress and is not yet available as peer reviewed publication.

Caveats and Unmet Needs

Different dd-cfDNA thresholds have been tested in available studies, ranging from 0.15% to 0.25%. Assay variability, limit of detection, and other characteristics vary between commercially available tests, and the rate of rejection in the study populations may affect the resulting test performance. These test characteristics, in addition, have been determined in studies with centralized laboratory measurements. It is unknown how they might be applicable in clinical practice when the assay is performed in local laboratories.

It must be noted that, as compared to kidney and lung transplantation studies, the dd-cfDNA threshold value is much lower in heart transplantation. An important question which remains unaddressed is whether the accuracy of the dd-cfDNA test, often reported as coefficient of variability, is applicable at different dd-cfDNA thresholds. However, even with constant standard variation, the coefficient of variability of an assay is inversely related to the mean value at different ranges of the data. In addition, variability of assay measures generally increases with lower concentration of the analyte. Thus, a coefficient of variability measured at high dd-cfDNA thresholds used for lung and kidney transplantation may not be applicable in heart transplantation with lower dd-cfDNA thresholds. The coefficient of variability should be computed around all desired thresholds.

Some data suggest that absolute dd-cfDNA quantity may be a better marker than dd-cfDNA fraction, as it is independent of changes in background (recipient) cfDNA levels. In the DEDUCE study, a post-hoc analysis using dd-cfDNA quantity indicated that incorporation of this measure could increase the sensitivity of the assay [11].

There is a paucity of data on whether dd-cfDNA assays can be employed for monitoring treatment response during and after AR. Small studies have shown a reduction in cfDNA levels after rejection treatment; however, the assays have not been validated for therapeutic guidance. Additionally, dd-cfDNA levels have been shown to be elevated in patients with de novo donor-specific antibodies (DSAs), raising the possibility of identifying pathological DSAs using these assays. However, these preliminary findings are hypothesis-generating and must be verified in large studies.

Question 2. In heart transplant patients, are dd-cfDNA and GEP reliable methods to monitor for cardiac allograft vasculopathy as compared with standard diagnostic methods?

Supporting Evidence

A small single-center pilot study performed in the US showed that dd-cfDNA is elevated in cardiac allograft vasculopathy (CAV) and suggested endothelial injury and ischemia as possible mechanisms [12]. However, another study from Spain using different dd-cfDNA detection methods and thresholds did not confirm the association between dd-cfDNA and CAV [13]. These divergent findings underscore the need for larger prospective studies to define the role of dd-cfDNA in screening for CAV (the SHORE registry is exploring this question). Similarly, a retrospective study did not support the use of GEP for CAV surveillance [8].

Question 3. In heart transplant patients with stable graft function, is dd-cfDNA or GEP a reliable marker to stratify prognosis as compared to standard clinical classifiers?

Supporting Evidence

There are no studies specifically powered and designed for exploring the prognostic role of either GEP or dd-cfDNA in heart transplantation. Major studies on these biomarkers were performed in stable low-risk patients, with very low mortality rates during their limited follow-up (up to 3-year) [7, 14]. Moreover, the few available post-hoc analyses reporting combined clinical outcomes provide contradictory results.

No association has been found between GEP scores and mortality during follow-up in different studies. Two sub-studies of major trials (IMAGE [15] and CARGO II [7]) published by Deng et al in 2014 [16] and Crespo-Leiro et al in 2015 [17], tested the performance of AlloMap™ as a predictor of major adverse cardiac transplant events (MACTE, a composite of acute rejection with hemodynamic compromise, graft dysfunction, death or retransplantation). In both cases, intraindividual variability (standard deviation of ≥4 GEP scores) predicted a higher incidence of MACTE in the next 2-3 years, with a hazard ratio of 1.76 per unit increase in variability in one of the studies [16]. Other ways of measuring repeated individual GEP scores (ordinal score, scores above a given threshold) did not show a similar predictive ability. Moreover, in the OAR study (Moayedi 2019) [8], no meaningful changes in GEP were seen in relation to specific heart transplant complications such as CAV, cancer or non-cytomegalovirus infections.

However, the existence of 2 sub-studies [16, 17] of major GEP trials with reasonably sized populations (369 and 91 patients, respectively) and differing characteristics (one USA-based, the second mainly European) with coincidental findings should not be dismissed to potentially identify GEP score change as a predictor of adverse outcomes. The main limitation of these studies is the need for ≥4 consecutive GEP scores to evaluate variability (standard deviation of all scores).

As for dd-cfDNA, a preliminary study (Zangwill, 2020) [18] focused on the first 10 days after heart transplantation in a small pediatric population showed that a blunted decline of initially elevated dd-cfDNA may be associated with early death. Two other studies found that total cfDNA levels greater than 50 ng/mL were associated with increased risk of major events (composite outcome of cardiac arrest, mechanical circulatory support, death) (Zangwill 2022 [19]), death (Scott, Zangwill 2022 [19, 20]) and treatment for infection [19, 20].

Only one exploratory abstract (Crespo-Leiro, 2017) [21] has been directed to evaluate the prognostic value of dd-cfDNA in stable HT recipients. It included 48 patients and 166 samples from the CARGO-II trial, and showed an association between the median of several individual dd-cfDNA values and subsequent incidence of MACTE (as defined above), p = 0.02, AUCOR = 0.77. Other dd-cfDNA measures, such as maximum value, individual measures, or variability of intraindividual measures did not predict MACTE.

Of note, several groups have found clear relationships between “total or nuclear cfDNA” (derived both from recipient and donor tissues) and several near-term events, such as death, cardiac arrest, and need for mechanical circulatory support [19]. Total cfDNA seems to be a marker of more extensive tissue damage, and has demonstrated prognostic value in different ICU patient populations. Total cfDNA elevations have also been seen in patients with infections after heart transplantation [20]. The same is true for sepsis, inflammatory diseases and cancer in non-transplant populations.

Caveats and Unmet Needs

Despite current available data do not support the use of dd-cfDNA as a biomarker predictive for subsequent clinical events, in the GRAfT study [3] dd-cfDNA elevations associated with negative EMB were predictive of subsequent biopsy-proven AR or allograft dysfunction. These findings suggest that asymptomatic dd-cfDNA elevation represents an opportunity for additional testing (e.g., donor-specific antibodies) and early intervention prior to detection of histopathological rejection. Current data do not support use of dd-cfDNA to titrate immunosuppressive medications, but the above preliminary findings suggest that patients with elevated dd-cfDNA in the absence of biopsy-proven rejection may benefit from closer monitoring. It remains to be investigated if intensification of immunosuppression in the setting of elevated dd-cfDNA and absence of histologic rejection could mitigate future episodes of biopsy-proven rejection, graft injury and/or graft dysfunction. On the other hand, we may hypothesize that low dd-cfDNA levels can be used to guide safe weaning of immunosuppression, thus decreasing lifelong risks of infections, malignancies and renal dysfunction, among complications. HeartCare Immuno-optimization in Cardiac Allografts (MOSAIC) (NCT05459181) is one such study aimed to determine whether patients at low risk of acute rejection can safely wean their post-transplant immunosuppressive medications using a combination of tests that include DSA, histology, donor-derived cell-free DNA (AlloSure), and gene expression profiling (AlloMap). The study is in the planning stages and is designed as an unblinded randomized controlled study of 930 HT recipients enrolled within 2 weeks of HT.

Question 4. In heart transplant patients with stable graft function, are cardiac biomarkers (NT-pro BNP, BNP, troponin) reliable surveillance tools for subclinical acute rejection monitoring, compared to EMB?

Supporting Evidence

Cardiac troponin (cTn) is the hallmark biomerker of cardiac damage and bears a central role in general cardiology for the diagnosis of acute coronary syndromes and to stratify cardiovascular prognosis. However its role in the setting of heart transplantation is controversial. Myocyte damage is the pathologic hallmark of moderate to severe ACR, so an elevated cTn level would be expected during an episode of ACR, in particular for high-sensitivity assays (hs-cTn) [22–24]. However, the results of different studies are conflicting, with some reporting no association between cTn and EMB-proven ACR [24–26] and others finding that cTn levels [27] were significantly higher in patients with ACR [28–32].

A systematic review with meta-analysis of 27 studies with 1,684 patients confirmed a poor diagnostic accuracy [33].

A systematic review by Fitzsimons et al [34] showed that cTn assays did not have sufficient specificity to diagnose ACR in place of EMB, but hs-cTn assays may have sufficient sensitivity and negative predictive value to exclude ACR and limit the need for surveillance EMB.

Caveats and Unmet Needs

Studies about cTn in the diagnosis or surveillance of rejection are mostly small-sized, retrospective and single center, leading to conflicting results. No randomized or prospective observational multicenter studies are available. Nevertheless, given the universal availability and low cost of the assay, and the proven reliability of this biomarker for cardiac injury, it may provide support to the complete clinical evaluation in ruling out acute cardiac injury in stable patients.

Supporting Evidence

Natriuretic peptides (NPs) are hormones produced by the myocardium in response to atrial and ventricular wall stress. BNP and its pro-hormone NT-proBNP are widely used in the diagnosis and prognostic stratification of heart failure patients. These biomarkers are sensitive to treatment and have also been used as surrogate endpoints for drug efficacy. Despite the fact that they are widely studied in the context of heart failure, evidence in the setting of heart transplantation is sparse and of poor quality.

Most observational studies showed that BNP/NT-proBNP levels were significantly higher in patients with graft rejection [32, 35–39]; however, they had low discriminating power to detect clinically significant episodes of rejection. There was a considerable overlap in BNP/NT-proBNP levels in patients with and without significant ACR.

BNP levels are reported to be higher in heart transplant recipients than in the general population, and are sensitive to higher grades of rejection and left ventricular dysfunction [35]. Klingenberg et al observed that changes in BNP levels compared to baseline were more useful, as BNP values could be influenced by patient variables such as sex or renal function, or transplant variables such as post-transplant time [40]. The association of BNP with AR and the usefulness of serial measurements were corroborated by other studies [41–43]. Prior studies have also demonstrated a decrease in NP levels in the first 6 months after transplant, which then reach a plateau [44, 45]. NP levels have further been shown to correlate with allograft dysfunction, cardiac allograft vasculopathy and cardiovascular death [46, 47].

However, other studies have found that BNP levels lack sufficient discriminatory ability to guide the performance of EMBs [48, 49]. In summary, despite initial promising studies, later studies did not find any association between AR episodes and BNP [50] or NT-proBNP [25, 51].

Caveats and Unmet Needs

The low quality of available evidence, the heterogeneity of factors affecting NP levels, and the conflicting results of published studies do not support the use of NPs for non-invasive surveillance of acute rejection. However, high levels of NPs are associated with poor long-term post-transplant prognosis, and in the context of multiparametric clinical evaluation, NP levels may help guide the assessment of graft function in asymptomatic patients.

Lung Transplantation

Question 5. Is dd-cfDNA a reliable marker to diagnose/monitor a) clinical and subclinical acute rejection or b) infection of the graft in lung transplant patients, compared with standard diagnostic methods (surveillance bronchoscopy with TBB for histopathology and bronchoalveolar lavage for microbiology testing)?

Recommendations:

Supporting Evidence

In cohort studies, dd-cfDNA increased with histologically documented ACR and clinical AMR [14, 52–59] The cohort studies reported good test performance of dd-cfDNA with a high NPV to detect rejection. Indeed, levels of dd-cfDNA increased up to 2–4 months prior to the diagnosis of AMR [52, 57].

Some studies reported [14, 54] that dd-cfDNA also increased in patients with infections, while other studies found no correlation [55, 58, 59]. While dd-cfDNA levels were often similar between pathogen positive and pathogen negative timepoints across lung transplant studies, two studies examined the association between the presence of pathogens with or without concomitant infectious symptoms and dd-cfDNA levels (infection was defined as detection of pathogens plus a reduction in pulmonary function test or presence of pulmonary symptoms. The studies showed higher dd-cfDNA levels at infection compared to stable controls or pathogens without signs or symptoms of infection; levels were similar for infection and acute rejection [52, 58].

For patients with serial dd-cfDNA levels and with dd-cfDNA levels <1%, fluctuations, increases in dd-cfDNA from baseline or less are normal [60]. From one multicenter study, monthly dd-cfDNA was used in routine care for surveillance for acute lung allograft dysfunction (ALAD). In total 175 patients were enrolled and followed over 6 months. A 1% dd-cfDNA level was used as a rule out threshold with a sensitivity of 74%, specificity of 88%, a PPV of 43% and NPV of 97% to detect ALAD, a composite endpoint of infection and acute rejection [58].

Optimal dd-cfDNA Thresholds and Relevance

Considerations in selecting a dd-cfDNA threshold as a rule out test include the test characteristic being prioritized (sensitivity, specificity, and PPV and NPV) or whether the patient has a single versus double lung transplant.

In the GRAfT and ALARM Studies, defining acute rejection as histopathology ACR grade ≥2 or histopathology grade 1 plus a reduction in forced expiratory volume in one second (FEV1) by at least 10% or presence of pulmonary symptoms and/or clinical AMR defined by the 2016 International Society for Heart and Lung Transplantation Consensus criteria, a 1% dd-cfDNA threshold showed sensitivity of 74%–77%, specificity of 84%–88%, NPV of 90%–97% and PPV of 43%–64% [52, 58]. In one study, defining acute rejection as only grade 3 and 4 ACR, a 1% dd-cfDNA showed a sensitivity of 100% [53]. These studies did not differentiate clinical from subclinical acute rejection.

In the GRAfT Study, a lower threshold of dd-cfDNA, 0.5%, showed sensitivity of 95%, specificity of 65% and NPV of 96% and a PPV of 64% [3]. In two other studies, a 0.85% or 0.87% threshold showed sensitivity of 76% and 73%, specificity of 53% and 56%, PPV of 34% and 43% and NPV of 84% and 86%, respectively [55, 59].

The optimal dd-cfDNA threshold for detection of acute rejection is lower in single lung (0.54%) vs. double lung transplant (1.1%): differences in dd-cfDNA in single versus double lung transplant is key for the interpretation of dd-cfDNA testing in research and clinical settings [56].

Timing of Initiation of Surveillance With dd-cfDNA Monitoring

We suggest use of dd-cfDNA starting from week 6 of transplantation and until 18–24 months after transplant. In the GRAfT Study, dd-cfDNA levels are high after transplant surgery, followed by a decay to reach low stable levels by week 6. Levels remain stable thereafter and increased beyond 2 years of transplant [52]. Stable, asymptomatic patients, independent of the risk of rejection or infection may be considered for dd-cfDNA assay. Studies thus far include adult transplant patients only.

Caveats and Knowledge Gaps

Several caveats and knowledge gaps still exist in the validation process for clinical use of dd-cfDNA in lung transplantation. The major areas of uncertainty are summarized in Table 3.

Question 6. Is dd-cfDNA a reliable therapeutic marker to monitor treatment response for acute rejection or infection of the graft in lung transplant patients, compared with standard diagnostic methods (i.e., follow-up surveillance TBBx)?

Supporting Evidence

In observational cohort studies, dd-cfDNA levels increased with detection of acute rejection or infection. The dd-cfDNA levels generally reduced with initiation of treatment. However, the relationship of the post-treatment dd-cfDNA kinetics and treatment response has not been addressed [52, 53, 57, 58].

Caveats and Knowledge Gaps

Carefully designed studies are needed to test if the dynamics of dd-cfDNA trends reflect response to treatment.

Question 3. Is dd-cfDNA a reliable marker to stratify prognosis of lung transplant recipients for chronic lung allograft dysfunction (CLAD), as compared to standard clinical classifiers?

Supporting Evidence

In a study combining the GRAfT and GTD cohorts, early post-transplant average dd-cfDNA levels, computed as the mean of at least three dd-cfDNA measurements between day 14 and 90 post-transplant could predict subsequent CLAD. Patients with average dd-cfDNA in the upper tertile showed a 6.6-fold higher risk of early death and/or CLAD and 4 times higher risk of developing AMR as compared to those in the lower tertile. A 1% increase in average dd-cfDNA increased the risk of early death/CLAD by ∼40% (HR 95% CI 1·1–1·5, p = 0·015) [61]. In a small pilot study, average dd-cfDNA levels were higher for patients who developed CLAD than for patients who did not develop CLAD [61].

From the same two cohorts, dd-cfDNA stratified PGD patients for subsequent risk of CLAD. Patients with PGD and high dd-cfDNA on day 3 of transplant showed increased odds of CLAD compared to patients with PGD and low dd-cfDNA levels [62].

The GRAfT study categorized pathogens based on their known risk of CLAD and showed that high-risk pathogens had higher dd-cfDNA levels at detection compared to low-risk pathogens. In patients with respiratory viral pathogens, dd-cfDNA ≥1% showed 2 times greater rates development of CLAD, CLAD stage progression and/or death, within 1 year of detection of viral pathogen [63].

Caveats and Knowledge Gaps

All the evidence supporting these recommendations are derived from studies performed by the same research group on two cohort of patients. There is a need for well-designed studies to test the prognostic utility of dd-cfDNA levels and trends in lung transplantation with respect to risk stratification.

Conclusion

This document provides current evidence on four known and upcoming biomarker assays and their use in rejection surveillance of cardiothoracic transplant recipients. The recommendations are aiming at optimizing clinical practice, patient health and post-transplant clinical outcome as well as identifying priorities for future research. Dd-cfDNA is the biomarker closest to the clinical applicability in lieu of the several observational studies showing a good negative predictive power to rule out rejection. However, the recommendation in favor of its use it is still supported by weak evidence because a prospective randomized study proving the benefit of this biomarker over the standard surveillance approaches is still lacking. An important limitation of dd-cfDNA is its low specificity. However, with this limitation and its high sensitivity, dd-cfDNA can be an ideal biomarker to monitor cardiothoracic transplant patients to rule out acute graft injury. Standard cardiac biomarkers such as troponin and natriuretic peptides cannot be recommended in standard clinical practice for rejection surveillance because of scattered and contradictory data. However, both troponin and natriuretic peptides may have a role in stratifying the prognosis and in identifying patients with subclinical graft dysfunction or injury. Additional biomarkers (Table 4) with a potential of being useful in cardiothoracic transplantation, like cfDNA epigenetic analysis and fragmentomics, exosomes, microRNA or multimodal approaches are in the pipeline but will need additional examination before implementation in clinical practice. These upcoming approaches may improve on the low specificity of dd-cfDNA to identify acute rejection phenotypes or other transplant complications.

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